PhytophthoraV1, Main, Exploration, bibRecord, 000C21

Genomes and virulence difference between two physiological races of Phytophthora nicotianae.

Identifieur interne : 000C21 ( Main/Exploration ); précédent : 000C20; suivant : 000C22

Genomes and virulence difference between two physiological races of Phytophthora nicotianae.

Auteurs : Hui Liu [République populaire de Chine] ; Xiao Ma [République populaire de Chine] ; Haiqin Yu ; Dunhuang Fang ; Yongping Li ; Xiao Wang [République populaire de Chine] ; Wen Wang [République populaire de Chine] ; Yang Dong [République populaire de Chine] ; Bingguang Xiao

Source :

GigaScience [ 2047-217X ] ; 2016.

RBID : pubmed:26823972

Descripteurs français

KwdFr :
- Analyse de regroupements (MeSH), Données de séquences moléculaires (MeSH), Génome fongique (génétique), Interactions hôte-pathogène (MeSH), Maladies des plantes (génétique), Maladies des plantes (microbiologie), Phytophthora (classification), Phytophthora (génétique), Phytophthora (pathogénicité), Protéines fongiques (classification), Protéines fongiques (génétique), Spécificité d'espèce (MeSH), Séquence d'acides aminés (MeSH), Séquençage nucléotidique à haut débit (méthodes), Tabac (génétique), Tabac (microbiologie), Transporteurs ABC (génétique), Variation génétique (MeSH), Virulence (génétique), Évolution moléculaire (MeSH).
MESH :
- génétique : Génome fongique, Maladies des plantes, Phytophthora, Protéines fongiques, Tabac, Transporteurs ABC, Virulence.
- microbiologie : Maladies des plantes, Tabac.
- méthodes : Séquençage nucléotidique à haut débit.
- pathogénicité : Phytophthora.
- classification : Analyse de regroupements, Données de séquences moléculaires, Interactions hôte-pathogène, Protéines fongiques, Spécificité d'espèce, Séquence d'acides aminés, Variation génétique, Évolution moléculaire.

English descriptors

KwdEn :
- ATP-Binding Cassette Transporters (genetics), Amino Acid Sequence (MeSH), Cluster Analysis (MeSH), Evolution, Molecular (MeSH), Fungal Proteins (classification), Fungal Proteins (genetics), Genetic Variation (MeSH), Genome, Fungal (genetics), High-Throughput Nucleotide Sequencing (methods), Host-Pathogen Interactions (MeSH), Molecular Sequence Data (MeSH), Phytophthora (classification), Phytophthora (genetics), Phytophthora (pathogenicity), Plant Diseases (genetics), Plant Diseases (microbiology), Species Specificity (MeSH), Tobacco (genetics), Tobacco (microbiology), Virulence (genetics).
MESH :
- chemical , classification : Fungal Proteins.
- chemical , genetics : ATP-Binding Cassette Transporters, Fungal Proteins.
- classification : Phytophthora.
- genetics : Genome, Fungal, Phytophthora, Plant Diseases, Tobacco, Virulence.
- methods : High-Throughput Nucleotide Sequencing.
- microbiology : Plant Diseases, Tobacco.
- pathogenicity : Phytophthora.
- Amino Acid Sequence, Cluster Analysis, Evolution, Molecular, Genetic Variation, Host-Pathogen Interactions, Molecular Sequence Data, Species Specificity.

Abstract

BACKGROUND

Black shank is a severe plant disease caused by the soil-borne pathogen Phytophthora nicotianae. Two physiological races of P. nicotianae, races 0 and 1, are predominantly observed in cultivated tobacco fields around the world. Race 0 has been reported to be more aggressive, having a shorter incubation period, and causing worse root rot symptoms, while race 1 causes more severe necrosis. The molecular mechanisms underlying the difference in virulence between race 0 and 1 remain elusive.

FINDINGS

We assembled and annotated the genomes of P. nicotianae races 0 and 1, which were obtained by a combination of PacBio single-molecular real-time sequencing and second-generation sequencing (both HiSeq and MiSeq platforms). Gene family analysis revealed a highly expanded ATP-binding cassette transporter gene family in P. nicotianae. Specifically, more RxLR effector genes were found in the genome of race 0 than in that of race 1. In addition, RxLR effector genes were found to be mainly distributed in gene-sparse, repeat-rich regions of the P. nicotianae genome.

CONCLUSIONS

These results provide not only high quality reference genomes of P. nicotianae, but also insights into the infection mechanisms of P. nicotianae and its co-evolution with the host plant. They also reveal insights into the difference in virulence between the two physiological races.

DOI: 10.1186/s13742-016-0108-7
PubMed: 26823972
PubMed Central: PMC4730604

Affiliations:

Links toward previous steps (curation, corpus...)

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Le document en format XML

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<term>Fungal Proteins (genetics)</term>
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<term>Phytophthora (pathogenicity)</term>
<term>Plant Diseases (genetics)</term>
<term>Plant Diseases (microbiology)</term>
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<term>Données de séquences moléculaires (MeSH)</term>
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<term>Interactions hôte-pathogène (MeSH)</term>
<term>Maladies des plantes (génétique)</term>
<term>Maladies des plantes (microbiologie)</term>
<term>Phytophthora (classification)</term>
<term>Phytophthora (génétique)</term>
<term>Phytophthora (pathogénicité)</term>
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<term>Protéines fongiques</term>
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<front><div type="abstract" xml:lang="en"><p><b>BACKGROUND</b>
</p>
<p>Black shank is a severe plant disease caused by the soil-borne pathogen Phytophthora nicotianae. Two physiological races of P. nicotianae, races 0 and 1, are predominantly observed in cultivated tobacco fields around the world. Race 0 has been reported to be more aggressive, having a shorter incubation period, and causing worse root rot symptoms, while race 1 causes more severe necrosis. The molecular mechanisms underlying the difference in virulence between race 0 and 1 remain elusive.</p>
</div>
<div type="abstract" xml:lang="en"><p><b>FINDINGS</b>
</p>
<p>We assembled and annotated the genomes of P. nicotianae races 0 and 1, which were obtained by a combination of PacBio single-molecular real-time sequencing and second-generation sequencing (both HiSeq and MiSeq platforms). Gene family analysis revealed a highly expanded ATP-binding cassette transporter gene family in P. nicotianae. Specifically, more RxLR effector genes were found in the genome of race 0 than in that of race 1. In addition, RxLR effector genes were found to be mainly distributed in gene-sparse, repeat-rich regions of the P. nicotianae genome.</p>
</div>
<div type="abstract" xml:lang="en"><p><b>CONCLUSIONS</b>
</p>
<p>These results provide not only high quality reference genomes of P. nicotianae, but also insights into the infection mechanisms of P. nicotianae and its co-evolution with the host plant. They also reveal insights into the difference in virulence between the two physiological races.</p>
</div>
</front>
</TEI>
<pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">26823972</PMID>
<DateCompleted><Year>2016</Year>
<Month>10</Month>
<Day>17</Day>
</DateCompleted>
<DateRevised><Year>2018</Year>
<Month>11</Month>
<Day>13</Day>
</DateRevised>
<Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Electronic">2047-217X</ISSN>
<JournalIssue CitedMedium="Internet"><Volume>5</Volume>
<PubDate><Year>2016</Year>
</PubDate>
</JournalIssue>
<Title>GigaScience</Title>
<ISOAbbreviation>Gigascience</ISOAbbreviation>
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<ArticleTitle>Genomes and virulence difference between two physiological races of Phytophthora nicotianae.</ArticleTitle>
<Pagination><MedlinePgn>3</MedlinePgn>
</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.1186/s13742-016-0108-7</ELocationID>
<Abstract><AbstractText Label="BACKGROUND" NlmCategory="BACKGROUND">Black shank is a severe plant disease caused by the soil-borne pathogen Phytophthora nicotianae. Two physiological races of P. nicotianae, races 0 and 1, are predominantly observed in cultivated tobacco fields around the world. Race 0 has been reported to be more aggressive, having a shorter incubation period, and causing worse root rot symptoms, while race 1 causes more severe necrosis. The molecular mechanisms underlying the difference in virulence between race 0 and 1 remain elusive.</AbstractText>
<AbstractText Label="FINDINGS" NlmCategory="RESULTS">We assembled and annotated the genomes of P. nicotianae races 0 and 1, which were obtained by a combination of PacBio single-molecular real-time sequencing and second-generation sequencing (both HiSeq and MiSeq platforms). Gene family analysis revealed a highly expanded ATP-binding cassette transporter gene family in P. nicotianae. Specifically, more RxLR effector genes were found in the genome of race 0 than in that of race 1. In addition, RxLR effector genes were found to be mainly distributed in gene-sparse, repeat-rich regions of the P. nicotianae genome.</AbstractText>
<AbstractText Label="CONCLUSIONS" NlmCategory="CONCLUSIONS">These results provide not only high quality reference genomes of P. nicotianae, but also insights into the infection mechanisms of P. nicotianae and its co-evolution with the host plant. They also reveal insights into the difference in virulence between the two physiological races.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Liu</LastName>
<ForeName>Hui</ForeName>
<Initials>H</Initials>
<AffiliationInfo><Affiliation>CAS-Max Planck Junior Research Group, State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, 650223 China ; University of Chinese Academy of Sciences, Beijing, 100049 China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Ma</LastName>
<ForeName>Xiao</ForeName>
<Initials>X</Initials>
<AffiliationInfo><Affiliation>Yunnan Agricultural University, Kunming, 650100 China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Yu</LastName>
<ForeName>Haiqin</ForeName>
<Initials>H</Initials>
<AffiliationInfo><Affiliation>Yunnan Academy of Tobacco Agricultural Sciences, Yuantong Street No.33, Kunming, Yunnan 650021 China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Fang</LastName>
<ForeName>Dunhuang</ForeName>
<Initials>D</Initials>
<AffiliationInfo><Affiliation>Yunnan Academy of Tobacco Agricultural Sciences, Yuantong Street No.33, Kunming, Yunnan 650021 China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Li</LastName>
<ForeName>Yongping</ForeName>
<Initials>Y</Initials>
<AffiliationInfo><Affiliation>Yunnan Academy of Tobacco Agricultural Sciences, Yuantong Street No.33, Kunming, Yunnan 650021 China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Wang</LastName>
<ForeName>Xiao</ForeName>
<Initials>X</Initials>
<AffiliationInfo><Affiliation>CAS-Max Planck Junior Research Group, State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, 650223 China ; University of Chinese Academy of Sciences, Beijing, 100049 China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Wang</LastName>
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Genomes and virulence difference between two physiological races of Phytophthora nicotianae.

Genomes and virulence difference between two physiological races of Phytophthora nicotianae.

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